Installation

Prerequisite

The following environments are required for SeqUD package:

• Python 3 (anaconda is preferable)

• SWIG >= 3.0

• C++ compiler

The following commands can be helpful for installing the C++ compiler:

• Linux

conda install gxx_linux-64 gcc_linux-64 swig

• Mac

open /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg

• Windows

Microsoft Visual Studio 14.0 is required, see python windows compliers for details.

• Colab

Run the following codes in Colab notebook:

!apt-get install swig3.0
!ln -s /usr/bin/swig3.0 /usr/bin/swig
!pip install git+https://github.com/ZebinYang/SeqUD.git

Github Installation

You can install the package by the following console command:

pip install git+http://github.com/ZebinYang/SeqUD.git

Manual Installation

If git is not available, you can manually install the package by downloading the source codes and then compiling it by hand:

• Download the source codes from http://github.com/ZebinYang/SeqUD.git.

• unzip and switch to the root folder.

• Run the following shell commands to finish installation.

pip install -r requirements.txt
python setup.py install